# HARKANA Workflow Examples Complete validated graphs; source-dependent compatibility still requires review. ## Save uploaded dataset Example ID: `save-upload` Save uploaded dataset Requirements: {"inputs": [{"description": "Review actual source variable and dimension bindings before submission.", "dimensions": ["spectral", "y", "x"], "inputID": "uploaded"}]} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Save uploaded dataset", "description": "Save uploaded dataset.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "rawOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Uploaded dataset", "save": { "members": "all" }, "views": [ { "featureID": "spectrum", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "rawOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "spectral": "spectral", "y": "y", "x": "x" } } }, "outputProfiles": { "rawOutput": "exploration" }, "generatedFeatures": { "rawOutput": [ "spectrum" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "c585bac6b479c9f6bc173af09025a63131be3ee558367458e7421baf032ef09d" } ``` ## Spatial average and save Example ID: `process-and-save` Spatial average and save Requirements: {"inputs": [{"description": "Review actual source variable and dimension bindings before submission.", "dimensions": ["spectral", "y", "x"], "inputID": "uploaded"}]} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Spatial average and save", "description": "Spatial average and save.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "spatialAverage", "displayName": "3x3 spatial mean", "nodeType": "local-mean", "nodeVersion": "local-mean-v2", "parameters": {} }, { "nodeID": "smoothedOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Spatially smoothed dataset", "save": { "members": "all" }, "views": [ { "featureID": "spectrum", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "spatialAverage", "toInput": "dataset", "binding": { "variable": "signal", "dimensions": { "axes": [ "y", "x" ] }, "coordinates": {}, "dimensionParameters": { "y": { "windowSize": 3 }, "x": { "windowSize": 3 } }, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "spatialAverage", "fromOutput": "result", "toNodeID": "smoothedOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "spectral": "spectral", "y": "y", "x": "x" } } }, "outputProfiles": { "smoothedOutput": "exploration" }, "generatedFeatures": { "smoothedOutput": [ "spectrum" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "7fa45e4dcfefc8971763f0c2fdee9feeb92339bbc0b76e04a270e4833a76f6d5" } ``` ## Save uploaded and spatially smoothed datasets Example ID: `preserve-source-and-derived-result` Save uploaded and spatially smoothed datasets Requirements: {"inputs": [{"description": "Review actual source variable and dimension bindings before submission.", "dimensions": ["spectral", "y", "x"], "inputID": "uploaded"}]} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Save uploaded and spatially smoothed datasets", "description": "Save uploaded and spatially smoothed datasets.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "spatialAverage", "displayName": "3x3 spatial mean", "nodeType": "local-mean", "nodeVersion": "local-mean-v2", "parameters": {} }, { "nodeID": "rawOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Uploaded dataset", "save": { "members": "all" }, "views": [ { "featureID": "spectrum", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [] } ], "analyses": [] } }, { "nodeID": "smoothedOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Spatially smoothed dataset", "save": { "members": "all" }, "views": [ { "featureID": "spectrum", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "spatialAverage", "toInput": "dataset", "binding": { "variable": "signal", "dimensions": { "axes": [ "y", "x" ] }, "coordinates": {}, "dimensionParameters": { "y": { "windowSize": 3 }, "x": { "windowSize": 3 } }, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "rawOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "spatialAverage", "fromOutput": "result", "toNodeID": "smoothedOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "spectral": "spectral", "y": "y", "x": "x" } } }, "outputProfiles": { "rawOutput": "exploration", "smoothedOutput": "exploration" }, "generatedFeatures": { "rawOutput": [ "spectrum" ], "smoothedOutput": [ "spectrum" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "3ca4469d6fb799fd2a9f251dfb752ecf603c02caebc33d608e023c540bd646f4" } ``` ## Corrected CARS dataset and Raman prediction Example ID: `hyperspectral-corrected-cars-dataset-and-raman-prediction` Preserve an already detector/NRB-corrected CARS dataset and run neural prediction. Requirements: {"caveats": ["The caller must establish that reference correction has already been performed; no source flag or modality infers it.", "Requires a strictly monotonic shift coordinate and complete finite spectra; model compatibility remains source-dependent."], "inputs": [{"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Bind the assigned spectral dimension and explicitly selected physical coordinate. Spatial and time dimensions are selected from inspection, not inferred from the project label.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["y", "x", "spectral"], "inputID": "uploaded", "sourceRole": "primary", "variable": "signal"}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Corrected CARS dataset and Raman prediction", "description": "Preserve an already detector/NRB-corrected CARS dataset and run neural prediction.", "nodes": [ { "nodeID": "input", "displayName": "Corrected CARS dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "prediction", "displayName": "CARS neural network prediction", "nodeType": "cars-neural-network-prediction", "nodeVersion": "cars-neural-network-prediction-v2", "parameters": { "predictiveIntervals": [ { "confidenceLevel": 95 }, { "confidenceLevel": 90 }, { "confidenceLevel": 75 }, { "confidenceLevel": 50 } ] } }, { "nodeID": "measurementOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Corrected CARS dataset", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [] }, { "featureID": "layers", "label": "Layers", "shortLabel": "Layers", "adapterID": "grid", "adapterVersion": "grid-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "y", "x" ], "browse": { "spectral": { "coverage": "all" } }, "windowDimension": "spectral", "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [] } ], "analyses": [] } }, { "nodeID": "predictionOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Raman spectrum", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "median", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "y", "x" ], "relationshipIDs": [ "predictive-95", "predictive-90", "predictive-75", "predictive-50" ] }, { "featureID": "layers", "label": "Layers", "shortLabel": "Layers", "adapterID": "grid", "adapterVersion": "grid-v1", "spatialDimensions": [], "signal": { "memberID": "median", "variable": "signal" }, "displayDimensions": [ "y", "x" ], "browse": { "spectral": { "coverage": "all" } }, "windowDimension": "spectral", "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "prediction", "toInput": "measurement", "binding": { "variable": "signal", "dimensions": { "axis": "spectral" }, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "measurementOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "prediction", "fromOutput": "result", "toNodeID": "predictionOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "y": "y", "x": "x", "spectral": "spectral" } } }, "outputProfiles": { "measurementOutput": "exploration", "predictionOutput": "exploration" }, "generatedFeatures": { "measurementOutput": [ "curve", "layers" ], "predictionOutput": [ "curve", "layers" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "610906b7cfe81b0c4275a78a7e664ec7f42accba0afdcb3c51fc6e71a94dcecb" } ``` ## CARS correction, Raman prediction, MEM retrieval, and Gaussian peaks Example ID: `hyperspectral-cars-correction-raman-prediction-mem-retrieval-and-gaussian-peaks` Compare reference-normalized CARS, neural prediction, MEM retrieval and three Gaussian peak ranges. Requirements: {"caveats": ["Reference spectral coordinate values must align; known intensity units must be compatible.", "Use a strictly monotonic shift axis with complete finite spectra; MEM keeps the catalog's relaxed uniform-axis default.", "The shift coordinate must use the intended physical scale and cover 1370-1480, 1960-2070 and 2690-2800 with enough samples per range.", "Gaussian fitting uses independent range-wise moments, not a joint least-squares decomposition; these authored ranges are not inferred from the source.", "Neural execution requires its provider and model resources; schema validity does not establish scientific suitability."], "inputs": [{"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Bind the assigned spectral dimension and explicitly selected physical coordinate. Spatial and time dimensions are selected from inspection, not inferred from the project label.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["y", "x", "spectral"], "inputID": "uploaded", "sourceRole": "primary", "variable": "signal"}, {"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Bind the assigned spectral dimension and explicitly selected physical coordinate. Spatial and time dimensions are selected from inspection, not inferred from the project label.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["spectral"], "inputID": "detector", "sourceRole": "reference", "variable": "signal"}, {"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Bind the assigned spectral dimension and explicitly selected physical coordinate. Spatial and time dimensions are selected from inspection, not inferred from the project label.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["spectral"], "inputID": "nonresonant", "sourceRole": "reference", "variable": "signal"}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "CARS correction, Raman prediction, MEM retrieval, and Gaussian peaks", "description": "Compare reference-normalized CARS, neural prediction, MEM retrieval and three Gaussian peak ranges.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded CARS dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "detectorBackgroundInput", "displayName": "Detector background", "nodeType": "reference-input", "nodeVersion": "reference-input-v2", "parameters": { "inputID": "detector" } }, { "nodeID": "nonResonantBackgroundInput", "displayName": "Non-resonant background", "nodeType": "reference-input", "nodeVersion": "reference-input-v2", "parameters": { "inputID": "nonresonant" } }, { "nodeID": "correction", "displayName": "CARS detector and NRB correction", "nodeType": "cars-bg-nrb-ratio", "nodeVersion": "cars-bg-nrb-ratio-v2", "parameters": { "denominatorZeroPolicy": "nan" } }, { "nodeID": "prediction", "displayName": "CARS neural network prediction", "nodeType": "cars-neural-network-prediction", "nodeVersion": "cars-neural-network-prediction-v2", "parameters": { "predictiveIntervals": [ { "confidenceLevel": 95 }, { "confidenceLevel": 90 }, { "confidenceLevel": 75 }, { "confidenceLevel": 50 } ] } }, { "nodeID": "mem", "displayName": "CARS MEM Raman retrieval", "nodeType": "cars-mem-raman-retrieval", "nodeVersion": "cars-mem-raman-retrieval-v2", "parameters": { "coordinateMode": "physical", "intensityFloor": 1e-12, "validateUniformAxis": false } }, { "nodeID": "gaussianMixture", "displayName": "Gaussian peak mixture fit", "nodeType": "gaussian-mixture-fit", "nodeVersion": "gaussian-mixture-fit-v2", "parameters": { "coordinateMode": "physical", "components": [ { "minimumValue": 1370.0, "maximumValue": 1480.0, "componentID": "peak-1370-1480", "label": "1370-1480" }, { "minimumValue": 1960.0, "maximumValue": 2070.0, "componentID": "peak-1960-2070", "label": "1960-2070" }, { "minimumValue": 2690.0, "maximumValue": 2800.0, "componentID": "peak-2690-2800", "label": "2690-2800" } ], "nonNegativeAmplitude": true } }, { "nodeID": "uploadedOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Uploaded CARS dataset", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": 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"toNodeID": "nonResonantBackgroundOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "correction", "fromOutput": "correctedMeasurement", "toNodeID": "correctedOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "prediction", "fromOutput": "result", "toNodeID": "predictionOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "mem", "fromOutput": "result", "toNodeID": "memOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "gaussianMixture", "fromOutput": "result", "toNodeID": "gaussianMixtureOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "y": "y", "x": "x", "spectral": "spectral" } }, "detector": { "variable": "signal", "dimensions": { "spectral": "spectral" } }, "nonresonant": { "variable": "signal", "dimensions": { "spectral": "spectral" } } }, "outputProfiles": { "uploadedOutput": "exploration", "detectorBackgroundOutput": "exploration", "nonResonantBackgroundOutput": "exploration", "correctedOutput": "exploration", "predictionOutput": "exploration", "memOutput": "exploration", "gaussianMixtureOutput": "exploration" }, "generatedFeatures": { "uploadedOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "pca-scores", "pca-loadings" ], "detectorBackgroundOutput": [ "curve" ], "nonResonantBackgroundOutput": [ "curve" ], "correctedOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "pca-scores", "pca-loadings" ], "predictionOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "pca-scores", "pca-loadings" ], "memOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "curve-real-component", "curve-phase", "curve-amplitude", "curve-log-amplitude", "pca-scores", "pca-loadings" ], "gaussianMixtureOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "pca-scores", "pca-loadings" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "8a77d624bd9980c2afa84478a4f1fae0cb60e2d9f0cdee23df52ffbcd7385b01" } ``` ## Raman correction and smoothed measurement Example ID: `single-spectrum-raman-correction-and-smoothed-measurement` Preserve the original, neural-corrected Raman result and independent 5-point moving average. Requirements: {"caveats": ["Requires a strictly monotonic shift axis and at least one complete finite spectrum.", "Provider/model availability and source-dependent scientific compatibility must be checked separately."], "inputs": [{"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Bind the assigned spectral dimension and explicitly selected physical coordinate. Spatial and time dimensions are selected from inspection, not inferred from the project label.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["spectral"], "inputID": "uploaded", "sourceRole": "primary", "variable": "signal"}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Raman correction and smoothed measurement", "description": "Preserve the original, neural-corrected Raman result and independent 5-point moving average.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded Raman measurement", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "ramanCorrection", "displayName": "Raman neural network correction", "nodeType": "raman-neural-network-correction", "nodeVersion": "raman-neural-network-correction-v2", "parameters": { "predictiveIntervals": [ { "confidenceLevel": 95 }, { "confidenceLevel": 90 }, { "confidenceLevel": 75 }, { "confidenceLevel": 50 } ] } }, { "nodeID": "movingAverage", "displayName": "5-point moving average", "nodeType": "local-mean", "nodeVersion": "local-mean-v2", "parameters": {} }, { "nodeID": "measurementOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Uploaded Raman measurement", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [] } ], "analyses": [] } }, { "nodeID": "ramanCorrectionOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Raman correction", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "median", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [ "predictive-95", "predictive-90", "predictive-75", "predictive-50" ] } ], "analyses": [] } }, { "nodeID": "smoothedMeasurementOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "5-point moving average", "save": { "members": "all" }, "views": [ { "featureID": "curve", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "ramanCorrection", "toInput": "measurement", "binding": { "variable": "signal", "dimensions": { "axis": "spectral" }, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "movingAverage", "toInput": "dataset", "binding": { "variable": "signal", "dimensions": { "axes": [ "spectral" ] }, "coordinates": {}, "dimensionParameters": { "spectral": { "windowSize": 5 } }, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "measurementOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "ramanCorrection", "fromOutput": "result", "toNodeID": "ramanCorrectionOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } }, { "fromNodeID": "movingAverage", "fromOutput": "result", "toNodeID": "smoothedMeasurementOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "spectral": "spectral" } } }, "outputProfiles": { "measurementOutput": "exploration", "ramanCorrectionOutput": "exploration", "smoothedMeasurementOutput": "exploration" }, "generatedFeatures": { "measurementOutput": [ "curve" ], "ramanCorrectionOutput": [ "curve" ], "smoothedMeasurementOutput": [ "curve" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "8d242fa243c0999c9787b50b0518e17f90c8e040da560d8ae084c553fdf70afe" } ``` ## Import uploaded dataset Example ID: `hyperspectral-import-uploaded-dataset` Preserve selected source values and metadata unchanged. Requirements: {"caveats": [], "inputs": [{"coordinatePolicy": "physical-or-index", "coordinates": {}, "description": "Preserve the selected Dataset and prepare compatible exploration views.", "dimensionPolicy": "reviewed-source-selection", "dimensions": [], "inputID": "uploaded", "sourceRole": "primary", "variable": null}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Import uploaded dataset", "description": "Preserve selected source values and metadata unchanged.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded dataset", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "measurementOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Uploaded dataset", "save": { "members": "all" }, "views": [], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "measurementOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "spectral": "spectral", "y": "y", "x": "x", "time": "time" } } }, "outputProfiles": { "measurementOutput": "exploration" }, "generatedFeatures": { "measurementOutput": [ "curve", "layers", "mip", "hsv-mip", "umap", "pca-scores", "pca-loadings" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "71478601bb2e726fefb21d1b8cf4e2586e422e8580733f2f3841b3188d6d41b0" } ``` ## Import spectral time series Example ID: `spectral-time-series-import-uploaded-dataset` Preserve the uploaded spectral time series unchanged and browse its waterfall, spectra, and time traces. Requirements: {"caveats": [], "inputs": [{"coordinatePolicy": "explicit-physical-choice", "coordinates": {}, "description": "Select the time and spectral dimensions and their physical coordinates, or explicitly use index coordinates.", "dimensionPolicy": "reviewed-source-selection", "dimensions": ["time", "spectral"], "inputID": "uploaded", "sourceRole": "primary", "variable": "signal"}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "upload", "friendlyName": "Import spectral time series", "description": "Preserve the uploaded spectral time series unchanged and browse its waterfall, spectra, and time traces.", "nodes": [ { "nodeID": "input", "displayName": "Uploaded spectral time series", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "uploaded" } }, { "nodeID": "measurementOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Spectral time series", "save": { "members": "all" }, "views": [ { "featureID": "waterfall", "label": "Spectral waterfall", "shortLabel": "Waterfall heatmap", "spectrumFeatureID": "spectrum", "adapterID": "grid", "adapterVersion": "grid-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "time", "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [], "relationshipIDs": [] }, { "featureID": "spectrum", "label": "Spectrum", "shortLabel": "Spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "time" ], "relationshipIDs": [] }, { "featureID": "time-trace", "label": "Time trace", "shortLabel": "Time trace", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "dataset", "variable": "signal" }, "displayDimensions": [ "time" ], "browse": {}, "fixedIndices": {}, "coordinates": {}, "selectionDimensions": [ "spectral" ], "relationshipIDs": [] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "measurementOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "authoring": { "version": "workflow-authoring-v1", "inputs": { "uploaded": { "variable": "signal", "dimensions": { "time": "time", "spectral": "spectral" } } }, "outputProfiles": { "measurementOutput": "exploration" }, "generatedFeatures": { "measurementOutput": [ "waterfall", "spectrum", "time-trace" ] }, "resolvedInputs": {}, "generatedRequests": {} }, "workflowHash": "67a9c205276cfef31ff56ff50ed06305be22bda7e870c62528bab149703797ec" } ``` ## Temporal GP mean and uncertainty Example ID: `temporal-gp-mean-and-uncertainty` Fit independent temporal curves for each spectral sample and prepare mean and uncertainty views. Requirements: {"bindingPolicy": "This graph assumes the stated exact input metadata. Use the user's reviewed input description for other names and exact package sourceBindings; do not invent them.", "inputs": [{"coordinates": {"spectral": "spectralAxis", "time": "timeAxis"}, "dimensions": ["time", "spectral"], "inputID": "input1", "variable": "signal"}], "scientificCompatibility": "source-dependent-validation-deferred"} ```json { "version": "processing-workflow-v2", "phase": "postprocessing", "friendlyName": "Temporal GP mean and uncertainty", "description": "Fit independent temporal curves for each spectral sample and prepare mean and uncertainty views.", "nodes": [ { "nodeID": "input", "displayName": "Selected spectral time series", "nodeType": "dataset-input", "nodeVersion": "dataset-input-v2", "parameters": { "inputID": "input1" } }, { "nodeID": "temporalGP", "displayName": "Temporal Gaussian process regression", "nodeType": "gaussian-process-regression", "nodeVersion": "gaussian-process-regression-v2", "parameters": { "fitMode": "bbmm", "fitScope": "independent", "kernel": { "family": "matern-5/2", "lengthscaleMode": "anisotropic", "lengthscales": [], "outputScale": { "mode": "estimate" } }, "observationNoise": { "mode": "estimate" }, "intervalSigmas": [ 1.96 ], "intervalDistributions": [ "latent", "observation" ], "trainingIterations": 75, "convergenceTolerance": 0.0001, "convergencePatience": 10, "learningRate": 0.05, "inducingPointCount": 256, "miniBatchSize": 1024 } }, { "nodeID": "gpOutput", "nodeType": "analysis-output", "nodeVersion": "analysis-output-v2", "parameters": { "friendlyName": "Temporal GP mean and uncertainty", "save": { "members": "all" }, "views": [ { "featureID": "time-trace", "label": "GP time trace and uncertainty", "shortLabel": "GP time trace", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "mean", "variable": "signal" }, "displayDimensions": [ "time" ], "browse": {}, "fixedIndices": {}, "coordinates": { "time": { "memberID": "mean", "coordinate": "timeAxis" }, "spectral": { "memberID": "mean", "coordinate": "spectralAxis" } }, "selectionDimensions": [ "spectral" ], "relationshipIDs": [ "latent-1_96", "observation-1_96" ] }, { "featureID": "waterfall", "label": "GP mean spectral waterfall", "shortLabel": "GP waterfall", "spectrumFeatureID": "spectrum", "adapterID": "grid", "adapterVersion": "grid-v1", "spatialDimensions": [], "signal": { "memberID": "mean", "variable": "signal" }, "displayDimensions": [ "time", "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": { "time": { "memberID": "mean", "coordinate": "timeAxis" }, "spectral": { "memberID": "mean", "coordinate": "spectralAxis" } }, "selectionDimensions": [], "relationshipIDs": [] }, { "featureID": "spectrum", "label": "GP mean spectrum", "shortLabel": "GP spectrum", "adapterID": "line", "adapterVersion": "line-v1", "spatialDimensions": [], "signal": { "memberID": "mean", "variable": "signal" }, "displayDimensions": [ "spectral" ], "browse": {}, "fixedIndices": {}, "coordinates": { "time": { "memberID": "mean", "coordinate": "timeAxis" }, "spectral": { "memberID": "mean", "coordinate": "spectralAxis" } }, "selectionDimensions": [ "time" ], "relationshipIDs": [ "latent-1_96", "observation-1_96" ] } ], "analyses": [] } } ], "edges": [ { "fromNodeID": "input", "fromOutput": "dataset", "toNodeID": "temporalGP", "toInput": "dataset", "binding": { "variable": "signal", "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [ "timeAxis" ], "groupByCoordinates": [] } }, { "fromNodeID": "temporalGP", "fromOutput": "result", "toNodeID": "gpOutput", "toInput": "primary", "binding": { "dimensions": {}, "coordinates": {}, "dimensionParameters": {}, "modeledCoordinates": [], "groupByCoordinates": [] } } ], "workflowHash": "95ad025c34847e6d906c3e1e235e2588371678badc200bbb096735494ff6354f" } ```